I have two images (slices) which were taken by two camera sensors to complete one image. However, due to some differences in sensors' performance, the colour/tones of them are different and I need ...

I'm using tifffile in python to save out 3-channel tiff stacks, which I then want to read into ImageJ or FIJI. These tiff stacks open as composites in ImageJ with each channel assigned a (presumabl...

I am using Python to design a software, and the image processing is one of the steps. I am using ImageJ to realize this. Since there is a Jython interpreter within ImageJ, which can be opened with...

I want to scan a number of papers through Java. I found the mm's computing twain library. When I run the example TwainExample.java at the site, I receive this error. uk.co.mmscomputing.device.t...

When starting my Java application, I get exceptions when trying to save images. In Eclipse, however, everything works fine. The application is built using fatjar and the necessary libraries (jar_im...

I'm looking through a dataset set of images in ImageJ (a stack of .tif images, about 130 frames), and I have a problem with the dataset. It's a series of microscope images, with each frame being a ...

Is it possible to find number of images in a DICOM study by reading a DICOM header of a file in that study? I am developing a Java application that receives DICOM studies from different sources. ...

I am trying to save the XY coordinates of a binary image in R similarly to the save "Save XY Coordinates" function in ImageJ. I've looked through several image analysis packages available for R, bu...

I am new to ImageJ and I am seeking to add grain (as defined here: http://en.wikipedia.org/wiki/Film_grain) to an image using the programmatic API of ImageJ. Is it possible? If so how? Where is t...

In a regular Java application, I have a BufferedImage that I would like to manipulate with ImageJ. I have a macro that is exactly what I need to execute. I suspect that the first step is to make an...

I am trying to count the number of hairs transplanted in the following image. So practically, I have to count the number of spots I can find in the center of image. (I've uploaded the inverted ima...

I would like to use the AVI_Writer from the ImageJ API in my java program. However, even though I can automate the movie writing, I haven't found out how to change the framerate when using the meth...

Here is what I want to do: I want to run Fiji from command-line, to do something like batch image processing. I imagine by typing some command at some console, some batch file can be launched to...

I am working with extremely large tif images that I am composing into a large single image. I have a library that was created by a colleague of mine that generates the image pyramid and provides a ...

I've written a macro in imageJ that spits out a data frame which I then analyze in R. I'd love to be able to have the whole procedure work in R without having to first run the macro manually in ima...

I have already found edges of an image thanks to imageJ library. Now, I'd like to get an array which would contain these edges. There is a topic about it here but i couldn't comment and there was...

I have a stack of images with a bar close to the center. As the stack progresses the bar pivots around one end and the entire stack contains images with the bar rotated at many different angles up ...

I want to use find edges option of the ImageJ, have the edges-found array and save it to another file programatically. ImagePlus ip1 = IJ.openImage("myimage.jpg"); ImageProcessor ip = new ColorPro...

I have some experience with R as a statistics platform, but am inexperienced in image based maths. I have a series of photographs (tiff format, px/µm is known) with holes and irregular curves. I'd ...

From Mathematica, I wish to pass an image to an ImageJ plugin and get the result sent from ImageJ to Mathematica. JLink is the tool that will help, but I am familiar neither with it nor with Imag...