UPDATED: In the end, the solution I opted to use for clustering my large dataset was one suggested by Anony-Mousse below. That is, using ELKI's DBSCAN implimentation to do my clustering rather than...

I have a large amount of data that I want to cluster with Scikit's DBSCAN. I do it with the following line: dbscanObject = DBSCAN(eps=20, min_samples=15).fit(featureVectors) Unfortunately, this ...

I am using DBSCAN to cluster some data using Scikit-Learn (Python 2.7): from sklearn.cluster import DBSCAN dbscan = DBSCAN(random_state=0) dbscan.fit(X) However, I found that there was no built-...

By my understanding of DBSCAN, it's possible for you to specify an epsilon of, say, 100 meters and — because DBSCAN takes into account density-reachability and not direct density-reachability when ...

I am using DBSCAN for clustering. However, now I want to pick a point from each cluster that represents it, but I realized that DBSCAN does not have centroids as in kmeans. However, I observed that...

I need to find naturally occurring classes of nouns based on their distribution with different preposition (like agentive, instrumental, time, place etc.). I tried using k-means clustering but of l...

I am using scikit-learn library and building a pipeline from it. This is the last (and main) part of pipeline that I build: preprocessor_steps = [('data_transformer', data_transformer), ('reduce_d...

which clustering method is considered to be the best among DBSCAN and HDBSCAN and what is the reason behind that?

I have been searching around for an implementation of DBSCAN for 3 dimensional points without much luck. Does anyone know I library that handles this or has any experience with doing this? I am ass...

Say i have the following dataframe stored as a variable called coordinates, where the first few rows look like: business_lat business_lng business_rating 0 19.111841 72.910729 5. 1 19.111342 72.90...

I want to run some experiments on semi-supervised (constrained) clustering, in particular with background knowledge provided as instance level pairwise constraints (Must-Link or Cannot-Link constra...

I have a dataframe with latitude and longitude pairs. Here is my dataframe look like. order_lat order_long 0 19.111841 72.910729 1 19.111342 72.908387 2 19.111342 72.908387 3 19.137815 72.914085...

![enter image description here][1] from sklearn.cluster import DBSCAN dbscan = DBSCAN(eps=0.001, min_samples=10) clustering = dbscan.fit(X) Example vectors： array([[ 0.05811029, -1.089355 , -1...

The Scenario: I'm performing Clustering over Movie Lens Dataset, where I have this Dataset in 2 formats: OLD FORMAT: uid iid rat 941 1 5 941 7 4 941 15 4 941 117 5 941 124 5 941 147 4 941 181 5 ...

Scikit-learn implementation of K-means has a predict() function which can be applied on unseen data. Where as DBSCAN and Agglomerative does not have a predict() function. All the three algorithms h...

Reading around, I find it is possible to pass a precomputed distance matrix into SKLearn DBSCAN. Unfortunately, I don't know how to pass it for calculation. Say I have a 1D array with 100 elements,...

I've been searching for an answer for this question for quite a while, so I'm hoping someone can help me. I'm using dbscan from the fpc library in R. For example, I am looking at the USArrests data...

How do I plot (in python) the distance graph for a given value of min-points in DBSCAN??? I am looking for the knee and corresponding epsilon value. In the sklearn I do not see any method that r...

I am trying to use DBSCAN from scikitlearn to segment an image based on color. The results I'm getting are . As you can see there are 3 clusters. My goal is to separate the buoys in the picture int...

I would like to do some DBSCAN on Spark. I have currently found 2 implementations: https://github.com/irvingc/dbscan-on-spark https://github.com/alitouka/spark_dbscan I have tested the first on...

I have the following code to estimate the eps for DBSCAN. If the code is fine then I have obtained the knn distance plot. The code is : ns = 4 nbrs = NearestNeighbors(n_neighbors=ns).fit(data) dis...

I'm using the method dbscan::dbscan in order to cluster my data by location and density. My data looks like this: str(data) 'data.frame': 4872 obs. of 3 variables: $ price : num ... $ lat : num...

What routine or algorithm should I use to provide eps and minPts parameters to DBSCAN algorithm for efficient results?

I am using sklearn DBSCAN to cluster my data as follows. #Apply DBSCAN (sims == my data as list of lists) db1 = DBSCAN(min_samples=1, metric='precomputed').fit(sims) db1_labels = db1.labels_ db1n...

If I apply Scikit's DBSCAN (http://scikit-learn.org/stable/modules/generated/sklearn.cluster.DBSCAN.html) on a similarity matrix, I get a series of labels back. Some of these labels are -1. The doc...