According to one of the answered questions by NCBI Help Desk , we cannot "bulk-download" PubMed Central. However, can I use "NCBI E-utilities" to download all full-text papers in PMC database using...

So im making a query it returns me PMCIDs which is again used to query using tidypmc libray to parse table which contains metadata from various papers, which is finally returned as list.Some of the...

I have recently been using the excellent rplos package, which makes it very easy to search through papers hosted on the Public Library of Science (PLOS) API. I've hit a snag, in that the API itself...

I have list of pmids i want to get abstracts for both of them in a single url hit pmids=[17284678,9997] abstract_dict={} url = https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi? db=pub...

I am trying to use Entrez to import publication data into a database. The search part works fine, but when I try to parse: from Bio import Entrez def create_publication(pmid): handle = Entrez.e...

I want to download all the pubmed data abstracts. Does anyone know how I can easily download all of the pubmed article abstracts? I got the source of the data : ftp://ftp.ncbi.nlm.nih.gov/pub/pmc...

I am new to python and would like to extract abstracts from pubmed using the entrez system from the bio package. I got the esearch to give me my UIDs (stored in my_list_ges) and I can also download...

I'm trying to use the PubMed API to search for articles with an exact title. As an example, I want to search for the title The cost-effectiveness of mirtazapine versus paroxetine in treating people...

I currently have the following code which queries pubmed: from Bio import Entrez Entrez.email = "[email protected]" # Always tell NCBI who you are handle = Entrez.esearch(db="pubmed", term="...