cheminformatics Questions

3

Solved

Is there a way to convert SMILES to either chemical name or IUPAC name using RDKit or other python modules? I couldn't find something very helpful in other posts. Thank you very much!
Exordium asked 13/10, 2020 at 5:27

4

Solved

I have a dataset of molecules represented with SMILES strings. I was trying to represent this as graphs. Is there a way to do so? For instance, let's say I have string CC(C)(C)c1ccc2occ(CC(=O)Nc3cc...
Sprat asked 16/7, 2019 at 17:38

6

Solved

I was just wondering, is there any way to convert IUPAC or common molecular names to SMILES? I want to do this without having to manually convert every single one utilizing online systems. Any inpu...
Theurich asked 28/2, 2019 at 16:23

3

Rather than crawl PubChem's website, I'd prefer to be nice and generate the images locally from the PubChem ftp site: ftp://ftp.ncbi.nih.gov/pubchem/specifications/ The only problem is that I'm ...

2

Solved

I'm using RDKit and trying to check molecules for exact match. After using Chem.MolFromSmiles() the expression m == p apparently doesn't lead to the desired result. Of course, I can check whether p...
Desiderative asked 13/2, 2020 at 15:45

1

Is there a method or package that converts a graph (or adjacency matrix) into a SMILES string? For instance, I know the atoms are [6 6 7 6 6 6 6 8] ([C C N C C C C O]), and the adjacency matrix is ...
Guanajuato asked 5/7, 2018 at 15:44
1

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