lsf Questions
6
Solved
Say I submit a job using something like bsub pwd. Now I would like to get the job ID of that job in order to build a dependency for the next job. Is there some way I can get bsub to return the job ...
Iridectomy asked 23/8, 2012 at 14:33
3
Solved
I have an issue with LSF Platform I cannot wrap my head around.
For scripting reason, I need to check the running/pending jobs with 'bjobs' (and other b***) with a perl script.
For some reason it...
3
Solved
I used to use a server with LSF but now I just transitioned to one with SLURM.
What is the equivalent command of bpeek (for LSF) in SLURM?
bpeek
bpeek Displays the stdout and stderr output of an...
2
Solved
Why is it not recommended to run squeue in a loop to avoid overloading Slurm, but no such limitations are mentioned for the bjobs tool from LSF or qstat from SGE ?
The man page for squeue states:
...
Actinopod asked 22/6, 2020 at 11:24
2
Solved
When using bsub with LSF, the -o option gave a lot of details such as when the job started and ended and how much memory and CPU time the job took. With SLURM, all I get is the same standard output...
3
Solved
Can I submit "one-liners" to SLURM?
Using bsub from LSF and the standard Linux utility xargs, I can easily submit a separate job for uncompressing all of the files in a directory:
ls *.gz | sed '...
5
Solved
I would like to submit a job with Platform LSF and have the output placed in a file (bsub -o), without a job report at the end of it. Using bsub -N removes the job report from the file, but instead...
Shipmate asked 27/1, 2012 at 18:36
1
Solved
I'm using a library that generates a whole ton of output to stderr (and there is really no way to suppress the output directly in the code; it is ROOT's Minuit2 minimizer which is known for not hav...
Villainy asked 3/11, 2014 at 2:42
1
BASIC PROBLEM: I want to submit N + 1 jobs to an LSF-managed Linux cluster in such a way that the (N + 1)-st "wrap-up" job is not run until all the preceding N jobs have finishe...
Charlena asked 17/10, 2012 at 22:13
1
Solved
I would like to program job limits for the LSF command bsub into my Perl script which launches LSF jobs under the hood. If I have something like 2000 jobs, I would like to run at most 20 jobs at an...
1
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