Is not deprecated. It depends on the application architecture if the DTO pattern should be used or not. For example, when you develop Web Services (using JAX-WS or JAX-RS), you should send DTO's over your web methods so a C# or Python client application may consume it, and your web method should not return an object which class has Hibernate annotations, remember than in other languages the Entity won´t be created with those annotations or other business logic inside.
EDIT (Based in your comment): That depends on the software architecture. For example, I'm working on a SOA project and we use DTO's for the Services Layer and the Presentation Layer. More deeper inside, we even use DTO's to handle database communication inside the services, we use only SP's to communicate with DB, so no Hibernate or any other ORM tools can work there, we could use Spring DAO and that framework uses DTO's too. You can find lots of DTO pattern in many applications nowadays.
More info that would be great for this question:
EDIT 2: Another source of information that will explain the main reason for using DTO's design, explained by Martin Fowler
Conclusion: DTO's are not an anti pattern. DTO's are meant to be used only when you need to pass data from one subsystem to another and they don't have a default or standar way to communicate.