How to make an overlapping barplot?

Question

Making a barplot the 'standard' way

dat <- read.table(text = "A   B 
+ 1 1 4
+ 2 2 3
+ 3 3 2
+ 4 4 1", header = TRUE)
barplot(as.matrix(dat))

gives a barplot like this:

Instead, I would like to have the different segnments to overlap, like so

How can I make such a plot in R?

Acroterion

I'm not sure I understand your desired behavior. Do you want something more like barplot(as.matrix(dat), beside=TRUE)? – Cooee

Answer 1

There are two ways I have used:

library('ggplot2')
counts <- with(diamonds, table(cut, clarity))
#            clarity
# cut           I1  SI2  SI1  VS2  VS1 VVS2 VVS1   IF
# Fair         210  466  408  261  170   69   17    9
# Good          96 1081 1560  978  648  286  186   71
# Very Good     84 2100 3240 2591 1775 1235  789  268
# Premium      205 2949 3575 3357 1989  870  616  230
# Ideal        146 2598 4282 5071 3589 2606 2047 1212

It is painfully easy in ggplot

ggplot(diamonds, aes(clarity, fill = cut)) + 
  geom_bar(position = 'identity', alpha = 0.3)

In base R

cols <- ggcols(nrow(counts))

for (ii in 1:nrow(counts))
  barplot(counts[ii, ], add = ii != 1, ylim = c(0, 5000),
          col = adjustcolor(cols[ii], 0.3),
          axes = FALSE, axisnames = FALSE, border = NA)

axis(1, barplot(counts, plot = FALSE), colnames(counts))
axis(2, las = 1)
title(main = 'identity')
box(bty = 'l')

legend('topright', bty = 'n', title = 'cut',
       legend = rownames(counts), fill = adjustcolor(cols, 0.5))

And to match the ggplot colors:

ggcols <- function (n, l = 65, c = 100) {
  hues <- seq(15, 375, length = n + 1)
  hcl(h = hues, l = l, c = c)[1:n]
}

Lauer

I would add a border=NA argument to the base barplot function. Produces a more attractive output. – Fanchette

agreed. good call, also fixed the legend and margins in the edit. It was bothering me – Lauer

Answer 2

In plain R overlapping bar plots can also be achieved by :

1 - making bars transparent using the alpha value of the rgb function call (e.g., rgb(redValue, greenValue, blueValue, alphaLevel) by which rgb(1, 0, 0, .5) corresponds to red with an alpha level of .5)

2 - adding different bar plots on top of each other using the option add=TRUE in the call to barplot Or in code:

dat <- read.table(text = "A   B
  1 4
  2 3
  3 2
  4 1", header = TRUE)

barplot(dat$A, col=rgb(1, 0, 0, .5)) 
barplot(dat$B, col=rgb(0, 1, 0, .5), add=TRUE) 

# adding a legend
legend('top', bty = 'n', title = 'Legend',
  legend = c('A', 'B'), fill = c('red', 'green'))

The plot can be further prettified, but I believed this code provides a very simple alternative which would do the trick.

Nunnery