The first thing you should do is to read this thread on SO "Thinking in AngularJS" if I have a jQuery background?. This will give you some perspective.
When it comes to Angular, it the model that drives the view and most of the times direct DOM manipulation is not required.
For example if you are using DOM manipulation to show\hide element, add remove class or set style, then better to use ng-show\ng-class\ng-style directive.
But there are cases when DOM manipulation is required and that is the time you write directives and either use jqLite or jQuery to manipulate DOM.
My suggestion would be to avoid jQuery unless you have to incorporate a jquery plugin that is dependent on jQuery.
While developing always look if the inbuilt directives that can serve your purpose. If not can jqLite be used to achieve what is desired. Your final resort should be jQuery.