With the following code I have successfully solved the problem.
library(RJSONIO)
nrow <- nrow(test)
counter <- 1
test$lon[counter] <- 0
test$lat[counter] <- 0
while (counter <= nrow){
CityName <- gsub(' ','%20',test$CityLong[counter]) #remove space for URLs
CountryCode <- test$Country[counter]
url <- paste(
"http://nominatim.openstreetmap.org/search?city="
, CityName
, "&countrycodes="
, CountryCode
, "&limit=9&format=json"
, sep="")
x <- fromJSON(url)
if(is.vector(x)){
test$lon[counter] <- x[[1]]$lon
test$lat[counter] <- x[[1]]$lat
}
counter <- counter + 1
}
As this is calling an external service (openstreetmaps.org) it can take a while for larger datasets. However, you probably only do this once in a while when new cities have been added to the list.