Yes, go ahead. It is easier to store every file in the database, than just using the database to keep track of where each file is.
If the files are small, performance should be fine. From the SQLite website:
... many developers are surprised to learn that SQLite can read and write smaller BLOBs (less than about 100KB in size) from its database faster than those same blobs can be read or written as separate files from the filesystem. (See 35% Faster Than The Filesystem and Internal Versus External BLOBs for further information.) There is overhead associated with operating a relational database engine, however one should not assume that direct file I/O is faster than SQLite database I/O, as often it is not.