Honestly it depends on what you would like to do. Multimodule projects are created for multiple reasons, one of them being you only need to deploy what has changed instead of all modules.
Think about it this way: if you had a non-multi-module project and you only had to change one line in the services layer, you have to rebuild the entire project and deploy all of the code again...even though only your services layer will change.
With multi-module projects, you can regenerate your project and deploy only what changed...your services. This reduces risk and you're assured that only your services module changed.
You also have a multitude of benefits to using multi-module projects that I'm not listing here but there is certainly a huge benefit to NOT keeping your version numbers of your modules in sync.
When you build your project, consider deploying it to a repository that will hold all compatible jars together for builds (each build creates a new folder with the parent-most pom version number). That way, you don't need to keep documentation about which jars are compatible...they're all just deployed together with a build number.