Copying the .jar file into the Android project's folder isn't always possible.
Especially if it's an output of another project in your workspace, and it keeps getting updated.
To solve this you'll have to add the jar as a linked file to your project, instead of importing it (which will copy it locally).
In the UI choose:
Project -> Import -> File System -> yourjar.jar -> (Options area) Advanced -> Create link in workspace.
The link is save in the .project file:
<linkedResources>
<link>
<name>yourjar.jar</name>
<type>1</type>
<locationURI>PARENT-5-PROJECT_LOC/bin/android_ndk10d_armeabi-v7a/yourjar.jar</locationURI>
</link>
</linkedResources>
PARENT-5-PROJECT_LOC
means relative to the project file, 5 directories up (../../../../../).
Then add it to the libraries:
Project -> Properties -> Java Build Path -> Libraries -> Add Jar -> yourjar.jar
In the same window choose the Order and Export tab and mark your jar so it will be added to the apk.