How to plot with a png as background? [duplicate]

Question

I made a plot with a 3 million points and saved it as PNG. It took a few hours and I would like to avoid re-drawing all the points.

How can I generate a new plot that has this PNG as a background?

Jigger

Never used it, but package png may have what you're after: cran.r-project.org/web/packages/png/png.pdf – Pfeffer

It would be good to add some transparency to your points, so you may see their distribution better. Like in a density plot. – Pneumatophore

Have a look at https://mcmap.net/q/408025/-overlay-data-onto-background-image – Rheometer

Answer 1

Try this:

library(png)

#Replace the directory and file information with your info
ima <- readPNG("C:\\Documents and Settings\\Bill\\Data\\R\\Data\\Images\\sun.png")

#Set up the plot area
plot(1:2, type='n', main="Plotting Over an Image", xlab="x", ylab="y")

#Get the plot information so the image will fill the plot box, and draw it
lim <- par()
rasterImage(ima, lim$usr[1], lim$usr[3], lim$usr[2], lim$usr[4])
grid()
lines(c(1, 1.2, 1.4, 1.6, 1.8, 2.0), c(1, 1.3, 1.7, 1.6, 1.7, 1.0), type="b", lwd=5, col="white")

Below is the plot.

Dilation

Answer 2

While @bill_080's answer directly answers your question, is this really what you want? If you want to plot onto this, you'll have to carefully align your coordinate systems. See e.g. Houston Crime Map how this can be done with ggplot2.

For your problem, it seems to me that there may be an easier solution: binning, i.e. ceating 2d histograms.

> df <- data.frame (x = rnorm (1e6), y = rnorm (1e6))
> system.time (plot (df))
       User      System verstrichen 
     54.468       0.044      54.658 
> library (hexbin)
> system.time (binned <- hexbin (df, xbins=200))
       User      System verstrichen 
      0.252       0.012       0.266 
> system.time (plot (binned))
       User      System verstrichen 
      0.704       0.040       0.784

hexbin works directly with lattice and ggplot2, but the center coordinates of the bins are in binned@xcm and binned@ycm, so you could also plot the result in base graphics. With high number of bins, you get a fast version of your original plot:

> system.time (plot (binned@xcm, binned@ycm, pch = 20, cex=0.4))
       User      System verstrichen 
      0.780       0.004       0.786 

but you can easily have the colours coding the density:

> plot (binned@xcm, binned@ycm, pch = 20, cex=0.4, col = as.character (col))

> col <- cut (binned@count, 20)
> levels (col) <- grey.colors (20, start=0.9, end = 0)
> plot (binned@xcm, binned@ycm, pch = 20, cex=0.4, col = as.character (col))

Flinn