That depends on your set implementation.
If you have a hash set (O(1) lookup), then the approach indicated by all the other posters is correct. Iterate across all the elements in the first set. If it's in the second set, then add it to the result. This runs in O(n) time.
If you have a tree set (O(lg n) lookup), then this approach will work, but it runs in O(n lg n) time. You can do better; there's an O(n) solution. I assume that you have some sort of iterator that can traverse the elements of the two sets in ascending order. If you do, then the question is "given two lists in sorted order, find their intersection." This can be done using a modified version of the algorithm you use to merge two ranges. The idea is to keep track of the two iterators. At each step, compare the first elements of the ranges. If they're equal, add the element to the intersection and advance both iterators forward. If the first is less than the second, then advance the first iterator. If the first element is greater, then advance the second iterator. This runs in time O(n) because each iteration consumes at least one element, and there's only O(n) elements in total.