Is there a way to run multiple cells simultaneously in IPython notebook?

Question

One cell in my notebook executes for a long time, while the other CPU's in the machine are idle. Is it possible to run other cells in parallel?

Habitat

Answer 1

Yes. Here is the documentation for ipyparallel (formerly IPython parallel) that will show you how to spawn multiple IPython kernel. After you are free to distribute the work across cores, and you can prefix cells with %%px0 %%px1... %%px999 (once set up) to execute a cell on a specific engine, which in practice correspond to parallel execution of cell. I would suggest having a look at Dask as well.

Agneta

Answer 2

This does not answer your question directly but I think it would help a lot of people that are having the same problem. You can move variables between notebooks easily and then continue running the functions on another notebook then move the result back to the main notebook.

For example:

Notebook 1:

%store X
%store y

Notebook 2:

%store -r X
%store -r y

new_df = ...
%store new_df

Notebook 1:

%store -r new_df 

Scheffler

Answer 3

I got very hopeful with Matt answer of the ipp module, but the truth is that the ipp does not run two cells in pararell. Ipp lets you work in two or more engines but not simultaneously.

Take this example, you run the first code and 1 second later you run the second code, each code in different cells:

%%px --targets 0
import time
for i in range(0,6):
    time.sleep(1)
    print(time.ctime())

Gives:

Thu Jun 16 10:30:53 2022
Thu Jun 16 10:30:54 2022
Thu Jun 16 10:30:55 2022
Thu Jun 16 10:30:56 2022
Thu Jun 16 10:30:57 2022

And

%%px --targets 1
import time
for i in range(0,6):
    time.sleep(1)
    print(time.ctime())

Gives:

Thu Jun 16 10:30:59 2022
Thu Jun 16 10:31:00 2022
Thu Jun 16 10:31:01 2022
Thu Jun 16 10:31:02 2022
Thu Jun 16 10:31:03 2022

So in conclusion, the cells are not running at the same time, they are just running in different engines. The second cell waits the 1st one to finish, and once it finishes the second cell starts.

Hope there is simple solution for this -.-

PD: Here is the image Code in jupyter notebook

Couvade

could it be that your 2nd cell was blocked? Here is another post that may explain the situation. #56094992 – Rhpositive

You should be able to use the magic call %autoawait off to be able to run cells at the same time. – Phenylamine

Answer 4

I want to introduce a library that has this feature, this does not require multiple notebooks tricks etc...

Parsl is the Productive parallel programming in Python

Configuration

import parsl
from parsl.app.app import python_app, bash_app
parsl.load()

As an example, I edited this snippet from parsl/parsl-tutorial.

# App that generates a random number after a delay
@python_app
def generate(limit,delay):
    from random import randint
    import time
    time.sleep(delay)
    return randint(1,limit)

# Generate 5 random numbers between 1 and 10
import time
st = time.time()
rand_nums = []
for i in range(5):
    rand_nums.append(generate(10, 1))

# Wait for all apps to finish and collect the results
outputs = [i.result() for i in rand_nums]
et = time.time()
print(f"Execution time: {et - st:.2f}")

# Print results
print(outputs)

Result:

Execution time: 3.00
[1, 6, 4, 8, 3]

Note that the time it takes for the code to execute is 3s not 5s.

So what you can do is call the function (in this example is generate(...)) in a cell. This generate(...) will return a object. Then if you call the .result() on the object it will either:

1. Halt the program if it's waiting for the result.
2. Return the result if it's completed.

Therefore, as long as you call the .result() at the last few cells, the subroutine will be running in the background. And you can be sure at the last few cells the result can be obtained.

Regarding data dependencies, parsl is very smart, it will wait for the data that is dependent, even if it's decorated with the @python_app.

Centiliter

Answer 5

When someone wanted to leave a long-running calculation running in the background while running other things in the notebook, we were able to hack a solution using Python's multiprocesing. That allowed leaving a long-running cell running while running another cell in the classic notebook interface as well as Jupyterlab, see here.

Brittabrittain