How do you change library location in R? [duplicate]

Question

Due to the new R 2.11 release, I want to implement Dirk's suggestion here.

So for that I am asking - How can I (permanently) change R's library path? (The best solution would be one that can be run from within R)

Septuplet

Please see the 'R Installation and Admin manual' and/or help(Startup); there are several options that are clearly documented. You have several environment variables you can set; and several options about where to set them. My previous answer provides one; you did not say why you do not want to or cannot use it. But all other options are clearly documented; the question has also been re-hashed dozens of times on r-help. – Frothy

I have been look here - cran.r-project.org/bin/windows/base/… with no success. I'll check in that manual then. – Septuplet

o.k, using the example in the text, I get an error... Error: 16:10: unexpected '/' 16: R_LIBS=C:/ – Septuplet

Yes, you need to protect strings with quotes – Frothy

Thanks Dirk, actually - the error was because I didn't work with Renviron.site but instead used Rprofile.site ("You live, you learn...") – Septuplet

Note that those files are (on all systems) inside the R 'tree' and will be replaced by the next version. Consider user-local files, or system-wide environment variables. – Frothy

Thanks Dirk, I did - I'll publish what I wrote tomorrow, and would love for your feedback. Best, Tal – Septuplet

help(Startup) unfortunately does not document the new usage of .libPaths() as a function, probably the most practical way out in many cases. Nor does it give a pointer to .libPaths (?library does, though.) – Blaspheme

Answer 1

You can edit Rprofile in the base library (in 'C:/Program Files/R.Files/library/base/R' by default) to include code to be run on startup. Append

########        User code        ########
.libPaths('C:/my/dir')

to Rprofile using any text editor (like Notepad) to cause R to add 'C:/my/dir' to the list of libraries it knows about.

(Notepad can't save to Program Files, so save your edited Rprofile somewhere else and then copy it in using Windows Explorer.)

Vincenz

Answer 2

This post is just to mention an additional option. In case you need to set custom R libs in your Linux shell script you may easily do so by

export R_LIBS="~/R/lib"

See R admin guide on complete list of options.

Carleencarlen

Answer 3

I've used this successfully inside R script:

library("reshape2",lib.loc="/path/to/R-packages/")

useful if for whatever reason libraries are in more than one place.

Boylan

Answer 4

I'm late to the party but I encountered the same thing when I tried to get fancy and move my library and then had files being saved to a folder that was outdated:

.libloc <<- "C:/Program Files/rest_of_your_Library_FileName"

One other point to mention is that for Windows Computers, if you copy the address from Windows Explorer, you have to manually change the '\' to a '/' for the directory to be recognized.

Gauss

.lib.loc is now defunct for R >= 2.0.0 – Sanskritic