Finding local minimum values in pandas

Question

I have the following data:

Date
2020-07-20   -98.109956
2020-07-21   -94.408946
2020-07-22   -76.788330
2020-07-23   -71.094908
2020-07-24   -92.262792
2020-07-27   -97.932848
2020-07-28   -90.236719
2020-07-29   -96.301774
2020-07-30   -94.293501
2020-07-31   -98.110483
2020-08-03   -99.121514
2020-08-04   -73.715980
2020-08-05   -67.069465
2020-08-06   -57.401802
2020-08-07   -53.323235
2020-08-10   -50.000000
2020-08-11   -24.169180
2020-08-12   -10.286685
2020-08-13    -6.745360
2020-08-14   -19.178088
2020-08-17    -2.475911
2020-08-18   -11.586069
2020-08-19    -4.896705
2020-08-20   -10.435387
2020-08-21   -20.938373
2020-08-24    -8.269516
2020-08-25   -11.557382
2020-08-26    -2.938893
2020-08-27   -10.296292
2020-08-28    -7.050787
2020-08-31   -24.016059
2020-09-01   -27.694853
2020-09-02    -4.538226
2020-09-03    -8.166541
2020-09-04    -8.243151
2020-09-07    -3.356906
2020-09-08   -32.970033
2020-09-09   -11.716626
2020-09-10   -16.220030
2020-09-11   -33.078070
2020-09-14   -38.897395
2020-09-15   -35.068910
2020-09-16   -39.969342
2020-09-17   -23.889707
2020-09-18   -26.339946
2020-09-21   -68.164790
2020-09-22   -89.451473
2020-09-23   -72.038817
2020-09-24   -74.854345
2020-09-25   -61.359206
Name: CHAMTEMP, dtype: float64

The plot looks like this:

I am trying to find all the local min values by looking for data which is at least -80 and continues to give lower values until it gives a higher values.

For example: if the values are -80, -82, -83, -90, -89. In this example -90 would be the lowest value because -89 was higher than -90.

I tried this but i am getting an error:

data.loc[data < -80] and data.loc[data.shift(-1)<data.shift(0)]

ValueError: The truth value of a Series is ambiguous. Use a.empty, a.bool(), a.item(), a.any() or a.all().

How can i resolve this error?

Julejulee

Answer 1

You can first find all downward runs and get the end points of this runs. Assuming your data is in file filename.csv.

import pandas as pd
import numpy as np

df = pd.read_csv('filename.csv', sep='\s+', parse_dates=True)

down = df.Date.diff().values < 0
df['test'] = np.r_[down[1:] != down[:-1], False] & down

Plotting the data with parse_dates=True in pd.read_csv yields nicer diagrams

import matplotlib.pyplot as plt

plt.figure(figsize=(14,5))
plt.plot(df.Date)
plt.plot(df.Date[df.test], 'o');

Result

To find all local minima < -80 you can add this condition

plt.figure(figsize=(14,5))
plt.plot(df.Date)
plt.plot(df.Date[(df.test) & (df.Date < -80)], 'o');

Result

Benefaction

Answer 2

Assuming df is the dataframe and data is the column name:

import numpy as np
from scipy.signal import argrelextrema

df["lmin"] = False

df.iloc[argrelextrema(df["data"].to_numpy(), np.less)[0], list(df.columns).index("lmin")] = True

Yonkers

Answer 3

If I understand correctly, local minima are where the values are both less than their previous and next values. Therefore, condition is

(data < data.shift(1)) & (data < data.shift(-1))

Adding the condition less than -80, the conditions become

conds = (data < -80) & (data < data.shift(1)) & (data < data.shift(-1))

Use this condtion to slice

data_minima = data[conds]

Out[29]:

2020-07-27   -97.932848
2020-07-29   -96.301774
2020-08-03   -99.121514
2020-09-22   -89.451473
Name: 1, dtype: float64

Cameroncameroon

Answer 4

Try will create a new column which will be True if this is a local minimum:

import numpy as np
minimum = -80
df['local_min'] = np.where(((df['data'] < minimum) & (df['data'] < df['data'].shift(-1)) & (df['data'] > df['data'].shift(1)), True, False)

Inset