I think this link can help you - http://www.ibm.com/developerworks/java/library/j-cq121906.html#N10158
Basically, if your File1 is like -
<account>
<id>3A-00</id>
<name>acme</name>
</account>
And File2 is same, but only differs in order of <name>
and <id>
-
<account>
<name>acme</name>
<id>3A-00</id>
</account>
Then you can write a test like below which will compare these and return similar.
public void testIdenticalAndSimilar() throws Exception {
String controlXML = "<account><id>3A-00</id><name>acme</name></account>";
String testXML = "<account><name>acme</name><id>3A-00</id></account>";
Diff diff = new Diff(controlXML, testXML);
assertTrue(diff.similar());
assertFalse(diff.identical());
}
Hope that helps.