@gil-goldshlager, thanks for this workaround, I think a lot of developers are looking for this. I myself are struggling with this since a long time on one of my sites: sharemovi.es
I think most important thing you managed is to show old vs new comments side by side.
Unfortunately the yellow box still shows up in some instances, and some comments get lost consequently :
OK: post after 12.15.2011 without comments (http://sharemovi.es/theprestige)
OK: both post + comments after 12.15.2011 (http://sharemovi.es/biutiful)
OK: both post + comments before 12.15.2011 (http://sharemovi.es/thesocialnetwork, http://sharemovi.es/battlelosangeles and http://sharemovi.es/thequickandthedead) - really nice to see those comments back!
not OK: posts before 12.15.2011 without comments - 2 problems here:
a. yellow box with "Warning: this comments plugin is operating in compatibility mode, but has no posts yet. Consider specifying an explicit 'href' as suggested in the comments plugin documentation to take advantage of all plugin features."
b. the comments for those posts/pages that were made AFTER 12.15.2011 disappear (without comments: http://sharemovi.es/fromdusktilldawn, http://sharemovi.es/waiting, with comments - I checked moderation panel - http://sharemovi.es/ellesappelaitsarah and http://sharemovi.es/thegame )
All together, I get more comments now than before, so thanks again. However the yellow box is quite ugly, doesn't look professional. Very bad design decision from Facebook!
Hopefully you can look into this, I am happy to assist where possible.
Cheers
Bob