What you need is to put the texture in a specific slot, then use a sampler to read from it. In your app:
GLuint frameBuffer;
glGenFramebuffersEXT(1, &frameBuffer); //Create a frame buffer
glBindFramebufferEXT(GL_FRAMEBUFFER_EXT, frameBuffer); //Bind it so we draw to it
glFramebufferTexture2DEXT(GL_FRAMEBUFFER_EXT, GL_COLOR_ATTACHMENT0_EXT, GL_TEXTURE_2D, yourTexture, 0); //Attach yourTexture so drawing goes into it
//Draw here and it'll go into yourTexture.
glBindFramebufferEXT(GL_FRAMEBUFFER_EXT, 0); //Unbind the framebuffer so that you can draw normally again
//Here we put the texture in slot 1.
glActiveTexture(GL_TEXTURE1);
glBindTexture(GL_TEXTURE_2D, yourTexture);
glActiveTexture(GL_TEXTURE0); //Don't forget to go back to GL_TEXTURE0 if you're going to do more drawing later
//Now we tell your shader where to look.
GLint var = glGetUniformLocationARB(yourShaderProgram, "yourSampler");
glUniform1i(var, 1); //We use 1 here because we used GL_TEXTURE1 to bind our texture
And in your fragment shader:
uniform sampler2D yourSampler;
void main()
{
gl_FragColor = texture2D(yourSampler, whateverCoordinatesYouWant);
}
You can use this with GL_TEXTURE2
and so on to access even more textures in your shader.