read.xls - read in variable-length list of sheets, with their names

Question

Given several .xls files with varying number of sheets, I am reading them into R usingread.xls from the gdata package. I have two related issues (solving the second issue should solve the first):

1. It is unknown ahead of time how many sheets each .xls file will have, and in fact this value will vary from one file to the next.
2. I need to capture the name of the sheet, which is relevant data

Right now, to resolve (1), I am using try() and iterating over sheet numbers until I hit an error.

How can I grab a list of the names of the sheet so that I can iterate over them?

Janitajanith

You should know by now that nothing is impossible with R :-) – Tsar

@carl, of course! I meant specifically with gdata, but even then I was happily proven incorrect. I will edit my question when I get back to my computer – Janitajanith

Answer 1

See the sheetCount and sheetNames functions (on same help page) in gdata. If xls <- "a.xls", say, then reading all sheets of a spreadsheet into a list, one sheet per component, is just this:

sapply(sheetNames(xls), read.xls, xls = xls, simplify = FALSE)

Note that the components will be named using the names of the sheets. Depending on the content it might make sense to remove simplify = FALSE.

Recommit

Answer 2

For such tasks I use library XLConnect. With its functions you can get the names of each sheet in a vector and then just determine the length of that vector.

#Read your workbook 
wb<-loadWorkbook("Your_workbook.xls")

#Save each sheet's name as a vector
lp<-getSheets(wb)

#Now read each sheet as separate list element
dat<-lapply(seq_along(lp),function(i) readWorksheet(wb,sheet=lp[i]))

UPDATE

As suggested by @Martin Studer XLConnect functions are already vectorized, so there is no need to use lapply(), instead just provide vector of sheet names or use function getSheets() inside readWorksheet().

dat <- readWorksheet(wb, sheet = getSheets(wb))

Lille

hmm... XLConnect seems to be a bit buggy today. Both readWorksheet and getSheets are giving me the same error related to function (classes, fdef, mtable) Incidentally, I couldnt install it off of Cran and instead installed from source. I will try again in a few days. – Janitajanith

@RicardoSaporta that's strange. I'm using version 0.2-4 (on Mac OS) and it's working fine for me without problems. – Lille

Looks like something may have changed recently: r-project.org/nosvn/R.check/r-release-macosx-ix86/… – Janitajanith

Note that most of XLConnect's functions are already vectorized. So you could just do the following: dat = readWorksheet(wb, sheet = getSheets(wb)) – Puke