Remove duplicate lines without sorting [duplicate]

Question

I have a utility script in Python:

#!/usr/bin/env python
import sys
unique_lines = []
duplicate_lines = []
for line in sys.stdin:
  if line in unique_lines:
    duplicate_lines.append(line)
  else:
    unique_lines.append(line)
    sys.stdout.write(line)
# optionally do something with duplicate_lines

This simple functionality (uniq without needing to sort first, stable ordering) must be available as a simple UNIX utility, mustn't it? Maybe a combination of filters in a pipe?

Reason for asking: needing this functionality on a system on which I cannot execute Python from anywhere.

Theomania

Unrelated: you should really use a set rather than a list in that Python script; checking for membership in a list is a linear-time operation. – Liebfraumilch

I removed "Python" from your tags and title since this really has nothing to do with Python. – Bydgoszcz

if this had to be done in Python a better approach would involve using the uniq_everseen itertools recipe: docs.python.org/library/itertools.html#recipes – Felisha

Answer 1

The UNIX Bash Scripting blog suggests:

awk '!x[$0]++'

This command is telling awk which lines to print. The variable $0 holds the entire contents of a line and square brackets are array access. So, for each line of the file, the node of the array x is incremented and the line printed if the content of that node was not (!) previously set.

Bydgoszcz

For a short awk statement like this (no curly brackets involved), the command is simply telling awk which lines to print. The variable $0 holds the entire contents of a line and square brackets are array access. So, for each line of the file, we are incrementing a node of the array named x and printing the line if the content of that node was not (!) previously set. – Dolph

I did a loop of 1000 runs with sort -u and that awk one, and both run in about 3s (awk took 0.15s more in avg). So I think it will work perfectly, thx! – Dahlberg

@AquariusPower But doesn't awk become faster than sort, if you increase the the size of the unordered input file? – Isolated

Perhaps this command would be easier to understand awk '!($0 in x){x[$0]++; print $0} – Isolated

!x[$0] does not test, if x[$0] is not set, but if x[$0] is zero or empty string. ($0 in x) tests if x[$0] is set. However unset variables have zero (or empty string) value in awk, when asked, so the test works. Besides, the post-fix operator ++ is performed after the logical not operator (!), which is crucial in the script. – Isolated

Most compact and finest scripts I tumbled across. Kudos! – Effeminize

Surely it would be less obfuscated to name that array e.g. seen instead of x, to avoid giving newbies the impression that awk syntax is line noise – Saxena

Keep in mind that this will load the entire file into memory, so don't try this on a 3GB text file without lots of RAM to spare. – Bladdernose

How to keep all the empty lines? – Siusan

@Bladdernose This won't necessarily load the whole file into memory, only the unique lines. This of course could end up being the whole file though if all the lines are unique. – Flour

Thank You! This is the finest and smartest solution to find unique elements within an array when I'm parsing tags in a delimited file. – Bridal

getting error as x[: event not found – Roede

@ChandanChoudhury The quotation marks are not optional. – Bydgoszcz

I had to use awk '!mem[$0]++ { print $0; fflush() }', because the buffering otherwise broke the point of the script I was developing. – Mary

https://mcmap.net/q/13366/-how-to-delete-duplicate-lines-in-a-file-without-sorting-it-in-unix with a detailed description of how it works. – Ebbie

Maybe a quick way to do this inline? – Rolanda

This will work if you also want to retain empty lines: awk 'length==0 || !x[$0]++'. – Drice

The Stackoverflow school of Bashcraft and AWKary! The trio would be so proud!!! – Kennedy

Worth putting in your .bash_aliases if you find yourself using it often. alias unique='awk "!seen[\$0]++"' Then you can just echo "$values" | unique – Wilmoth

this is pure magic! – Monotonous

Answer 2

A late answer - I just ran into a duplicate of this - but perhaps worth adding...

The principle behind @1_CR's answer can be written more concisely, using cat -n instead of awk to add line numbers:

cat -n file_name | sort -uk2 | sort -n | cut -f2-

• Use cat -n to prepend line numbers
• Use sort -u remove duplicate data (-k2 says 'start at field 2 for sort key')
• Use sort -n to sort by prepended number
• Use cut to remove the line numbering (-f2- says 'select field 2 till end')

Rashad

Easy to understand, and this is often valuable. Any ideas of performance with big files against shortest Michael Hoffman's solution above? – Strongbox

More readable/maintainable. Needed the same but with a reverse sort to keep only the last occurrence of each unique value. Using both --reverse and --unique in the same sort command doesn't return the results one might expect. Apparently, sort does a premature optimization by 1st applying --unique on the input (in order to reduce processing in subsequent steps). This removes data needed for the --reverse step too early. To fix this, insert a sort --reverse -k2 as the 1st sort in the pipeline: cat -n file_name | sort -rk2 | sort -uk2 | sort -nk1 | cut -f2- – Phenomenology

Took just 60 seconds for a 900MB+ text file with so many (randomly placed) duplicate lines that the result is only 39KB. Sufficiently fast. – Tremml

"Pipe" version: cat file_name | cat -n | sort -uk2 | sort -nk1 | cut -f2-. – Jd

"Pipe" version for keeping last occurrence instead of first one: cat file_name | cat -n | sort -rk2 | sort -uk2 | sort -nk1 | cut -f2-. – Jd

Redirecting the output of this answer's command to a file is blank. @victor-yarema 's version was able to redirect to a file as expected. (macOS zsh) – Downwash

If you're doing some other manipulation on temporarily-sorted lines, it might be more useful to add the line numbers at the end of each line. cat can't natively do this, but inserting rev pipes can: rev file_name | cat -n | rev | sort | my_complicated.sh | rev | sort -n | cut -f2- | rev – Quita

sort -uk2 as used here preserves the first copy of a line. If you want to preserve the last copy of a line, reverse the line order with tac then unreverse at the end: tac file_name | cat -n | sort -uk2 | sort -n | cut -f2- | tac. – Arlenarlena

Answer 3

To remove duplicate from 2 files :

awk '!a[$0]++' file1.csv file2.csv

Cozen

Answer 4

uq

uq is a small tool written in Rust. It performs uniqueness filtering without having to sort the input first, therefore can apply on continuous stream.

There are two advantages of this tool over the top-voted awk solution and other shell-based solutions:

1. uq remembers the occurence of lines using their hash values, so it doesn't use as much memory use when the lines are long.
2. uq can keep the memory usage constant by setting a limit on the number of entries to store (when the limit is reached, there is a flag to control either to override or to die), while the awk solution could run into OOM when there are too many lines.

Rattler

Quite inconvenient and less portable, given awk already does this. – Grouch

Answer 5

Michael Hoffman's solution above is short and sweet. For larger files, a Schwartzian transform approach involving the addition of an index field using awk followed by multiple rounds of sort and uniq involves less memory overhead. The following snippet works in bash

awk '{print(NR"\t"$0)}' file_name | sort -t$'\t' -k2,2 | uniq --skip-fields 1 | sort -k1,1 -t$'\t' | cut -f2 -d$'\t'

Felisha

this seems to be rather slow, though – Abrasion

Answer 6

Thanks 1_CR! I needed a "uniq -u" (remove duplicates entirely) rather than uniq (leave 1 copy of duplicates). The awk and perl solutions can't really be modified to do this, your's can! I may have also needed the lower memory use since I will be uniq'ing like 100,000,000 lines 8-). Just in case anyone else needs it, I just put a "-u" in the uniq portion of the command:

awk '{print(NR"\t"$0)}' file_name | sort -t$'\t' -k2,2 | uniq -u --skip-fields 1 | sort -k1,1 -t$'\t' | cut -f2 -d$'\t'

Smiga

Answer 7

I just wanted to remove all duplicates on following lines, not everywhere in the file. So I used:

awk '{
  if ($0 != PREVLINE) print $0;
  PREVLINE=$0;
}'

Encumbrance

doesn't uniq do just that... – Strunk

Answer 8

the uniq command works in an alias even http://man7.org/linux/man-pages/man1/uniq.1.html

Oleviaolfaction