I used the following command to generate html from the javascript file.
$> jsdoc --debug jquery.js
$> open out/index.html
Output of the command
DEBUG: JSDoc 3.3.2 (Sat, 13 Jun 2015 22:20:28 GMT)
DEBUG: Environment info: {"env":{"conf":{"tags":{"allowUnknownTags":true,"dictionaries":["jsdoc","closure"]},"templates":{"monospaceLinks":false,"cleverLinks":true},"source":{"includePattern":".+\\.js(doc)?$","excludePattern":"(^|\\/|\\\\)_"},"plugins":[]},"opts":{"_":["jquery.js"],"configure":"conf.json","debug":true,"destination":"./out/","encoding":"utf8"}}}
DEBUG: Parsing source files: ["/Users/darpandagha/jquery.js"]
Parsing /Users/darpandagha/jquery.js ...complete.
DEBUG: Finished parsing source files.
DEBUG: Indexing doclets...
DEBUG: Adding inherited symbols, mixins, and interface implementations...
DEBUG: Adding borrowed doclets...
DEBUG: Post-processing complete.
Generating output files...complete.
Finished running in 2.76 seconds.