To communicate with a TPM you need a Trusted Software Stack (TSS). There are two major freely available TSS: TrouSerS and jTSS.
jTSS is written in Java, whereas TrouSerS is written in C.
When using the pure Java jTSS you don't need jTSSWrapper. The wrapper is only needed when you want to access TrouSerS TSS through Java.
The jTpm Tools provide some command line tools to interact with the TPM. When looking at the source code of the tools you can figure out how to use jTSS API.
For more stuff related to Trusted Computing and Java have a look at http://trustedjava.sourceforge.net/
There's also a JSR that tries to define a high-level Java API for Trusted Computing, you can find the information as well as a reference implementation at http://jsr321.java.net/ (including public readable SVN repo).