Building 64-bit Python extensions with f2py on Windows

Question

I'm attempting to build a Python extension from Fortran source using Numpy's f2py.py script. I'm following the steps from http://www.scipy.org/F2PY_Windows (web archive). My system is Windows 7 64-bit, and I primarily use Python 2.7.3 [MSC v.1500 64 bit (AMD64)]. I have Numpy-MKL 1.7.1, from http://www.lfd.uci.edu/~gohlke/pythonlibs/#numpy

Here is what I've tried:

1. Choose a Fortran compiler. Since I'm using 64-bit Python, a 64-bit Fortran compiler is required. From MinGW-w64, I've tried a few of the personal builds.
2. Open a new cmd.exe shell, and edit the path to where I extracted the GCC compilers, i.e.:
   • set PATH=%PATH%;c:\gnu\mingw64\bin
   • set C_INCLUDE_PATH=C:\gnu\mingw64\include

3. Try the f2py.py build with this command:

   C:\Python27\python.exe C:\Python27\Scripts\f2py.py -c --fcompiler=gnu95 --compiler=mingw32 -lmsvcr90 -m foo foo.f90

The output is (removing noise lines at <--snip-->):

running build
<--snip-->
Reading fortran codes...
        Reading file 'foo.f90' (format:free)
Post-processing...
        Block: foo
                        Block: hello
Post-processing (stage 2)...
Building modules...
        Building module "foo"...
                Constructing wrapper function "hello"...
                  hello()
        Wrote C/API module "foo" to file "c:\users\mtoews\appdata\local\temp\tmpjr6qop\src.win-amd64-2.7\foomodule.c"
  adding 'c:\users\mtoews\appdata\local\temp\tmpjr6qop\src.win-amd64-2.7\fortranobject.c' to sources.
  adding 'c:\users\mtoews\appdata\local\temp\tmpjr6qop\src.win-amd64-2.7' to include_dirs.
copying C:\Python27\lib\site-packages\numpy\f2py\src\fortranobject.c -> c:\users\mtoews\appdata\local\temp\tmpjr6qop\src.win-amd64-2.7
copying C:\Python27\lib\site-packages\numpy\f2py\src\fortranobject.h -> c:\users\mtoews\appdata\local\temp\tmpjr6qop\src.win-amd64-2.7
build_src: building npy-pkg config files
running build_ext
Looking for python27.dll
Building import library (arch=AMD64): "C:\Python27\libs\libpython27.a" (from C:\Windows\system32\python27.dll)
Building msvcr library: "C:\Python27\libs\libmsvcr90.a" (from C:\Windows\winsxs\amd64_microsoft.vc90.crt_1fc8b3b9a1e18e3b_9.0.21022.8_none_750b37ff97f4f68b\msvcr90.dll)
Cannot build msvcr library: "msvcr90d.dll" not found
customize Mingw32CCompiler
customize Mingw32CCompiler using build_ext
customize Gnu95FCompiler
Found executable c:\gnu\mingw64\bin\gfortran.exe
Found executable c:\gnu\mingw64\bin\gfortran.exe
Traceback (most recent call last):
  File "C:\Python27\Scripts\f2py.py", line 24, in <module>
    main()
<--snip-->
  File "C:\Python27\lib\site-packages\numpy\distutils\fcompiler\gnu.py", line 331, in get_libraries
    raise NotImplementedError("Only MS compiler supported with gfortran on win64")
NotImplementedError: Only MS compiler supported with gfortran on win64

Note that the first time this is run, three new files are build in C:\Python27\libs:

• libmsvcr90.a
• libpython27.a
• python27.def

Do I need to install anything else? Do I need to provide other options to f2py? More generally speaking, it possible to build an extension for MSVC-build Python from GNU compilers?

Tempest

Answer 1

It seems that the solution is to just comment out the exception line. See this blog post.

Cursed

That appears to work. Also, I had to remove a -lmsvcr90 flag to f2py. – Tempest

Same for me, except I wasn't running f2py directly, it was being called internally via numpy distutils. This post helped me out (and note to delete the libmsvcr90.a file that got generated): mechaos.de/wordpress/?p=303#comment-169 – Neckerchief

Answer 2

I had the similar error when trying to install ggplot with

pip install -U ggplot

The solution was found here: https://github.com/obspy/obspy/wiki/Installation-via-Anaconda

Anaconda for Windows ships with C and Fortran compilers, however compiling on a 64bit Windows may require a small patch by changing line no. 331 in AnacondaInstallDir\Lib\site-packages\numpy\distutils\fcompiler\gnu.py to pass #raise NotImplementedError("Only MS compiler supported with gfortran on win64").

Durfee

Answer 3

This should be fixed in a future release, a discussed and changed.

It looks like this change did not make it to the 1.9.x maintenance branch, but in the master tree and whatever version is after.

Tempest