As of the time of writing, there is no round-tripping YAML parser for Java. There is the well-known SnakeYAML, which does not preserve comments (see the author's comment here), and a newer project named camel, which I know little of; but it definitely is not round-tripping.
What you can theoretically do is to use SnakeYaml's Yaml.parse
and then iterate over the events. Each event has a start and an end mark, giving the start and end line & column of the event. This makes it possible to map the events back into the source and discover the portions of the source that were not parsed into events (presumably comments). Having this mapping, you can now modify the event list and write it back. Finally, you read the result in a second time and discover the gaps between your events where there were comments in the original YAML, but not in the modified YAML, and re-insert those comments, giving you the final YAML with your modifications and the comments.
Of course, this is very complex. I would not advice to do it unless you a) have either a solid understanding of how YAML is structured or are willing to learn it, and b) your use-case justifies this amount of work.