When submitting batch jobs with qsub, is there a way to exclude a certain node (by hostname)? Something like # this is just a pseudo command: qsub myscript.sh --exclude computer01

I have two python scripts. The first script calls a table of second scripts in which I need to execute a third party python script. It looks something like this: # the call from the first script....

I would like to submit jobs via qsub on Sun Grid Engine (now: Oracle Grid Engine?). I do not wish to use the -sync yes option or qrsh, because I want my controlling program to be single-threaded an...

I have written a code that takes only 1-4 cpus. But when I submit a job on the cluster, I have to take at least one node with 16 cores per job. So I want to run several simulations on each node wit...

I would like to pass variables to a csh script by using "qsub -v" command. I understand we can list the parameters-value pairs as below, qsub -v par1=value1 par2=value2 myScript.csh Does anyone...

I have a 64-node cluster, running PBS Pro. If I submit many hundreds of jobs, I can get 64 running at once. This is great, except when all 64 jobs happen to be nearly I/O bound, and are reading/wri...

I have a shell script foo.sh which is a qsub job with content: #!/bin/bash -l #$ -S /bin/bash #$ -N $2 echo $1 I would like to pass two arguments. If I call qsub foo.sh a b the first argumen...

I have a perl script that prepares files for input to a binary program and submits the execution of the binary program to the SGE queueing system version 6.2u2. The jobs are submitted with the -sy...

I would like to run a script when all of the jobs that I have sent to a server are done. for example, I send ssh server "for i in config*; do qsub ./run 1 $i; done" And I get back a list of the...