mpi Questions

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I'm a new linux user. I'm getting this error during compilation. When I use the 'make' command within a build directory. Fatal Error: mpi.h No such file or directory I've installed OpenMpi using t...
Aquarius asked 3/2, 2021 at 19:44

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I am trying to understand what are the basic difference between Tensorflow Mirror Strategy and Horovod Distribution Strategy. From the documentation and the source code investigation I found that ...

0

Suppose I have 3 processes, and each wants to send 3 arrays a0,a1,a2 to processes 0,1, and 2. Given the MPI_Alltoallv interface, that is, int MPI_Alltoallv(const void *sendbuf, const int *sendcount...
Severus asked 11/9, 2020 at 22:3

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Solved

I having some synchronization issues using the OpenMPI implementation of MPI_Barrier: int rank; int nprocs; int rc = MPI_Init(&argc, &argv); if(rc != MPI_SUCCESS) { fprintf(stderr, "Una...
Surfboarding asked 3/3, 2011 at 14:30

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I want to create a generic MPI method, let's say a bcast for a specific object. but I need to convert primitive types to MPI_Data types ? any idea how I can do it ? template <typename T> voi...
Leadsman asked 27/2, 2017 at 16:4

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I'm working on a little application that multiples an array with a Matrix. It works without any problem. I'm loking for measure the execution time of the application. I can find the individual time...
Kero asked 14/3, 2011 at 12:44

1

I have just upgraded my Kubuntu from 18.04 to 20.04. Unfortunately there is an error that keeps showing up everytime I use apt upgrade or installing something with apt. The error is: update-altern...
Tortoiseshell asked 19/6, 2020 at 5:50

2

I have some code to print a 2D array to the standard output. The problem is that when I run it, every process writes to the output and the data overlaps, rendering it unusable. How can i build a c...
Preoccupied asked 12/1, 2012 at 19:26

5

I have been searching for a way to use mpi on my mac but everything is very advanced. I have successfully installed open-mpi using brew install open-mpi I have .c files ready for compiling and ...
Shelburne asked 9/3, 2017 at 19:28

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I have recently installed OpenMPI on my computer and when I try to run a simple Hello World program, it exits with the next error: ------------------------------------------------------- Primary j...
Wellmeaning asked 10/7, 2015 at 0:22

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The MPI-3 standard introduces shared-memory, that can be read and written by all processes sharing this memory without using calls to the MPI library. While there are examples of one-sided communic...
Bullroarer asked 19/2, 2020 at 10:33

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Horovod is combining NCCL and MPI into an wrapper for Distributed Deep Learning in for example TensorFlow. I haven't heard of NCCL previously and was looking into its functionality. The following i...
Cordwood asked 27/11, 2018 at 11:45

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-- I was able to solve this problem, see last edit below --- I am trying to use R on the computing cluster of my institute. For parallel computing issues, I would like to install the snow and the ...
Bumper asked 7/4, 2015 at 12:17

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Solved

I often (but not always) get the following error when running MPI jobs after switching wifi hosts. Fatal error in MPI_Init: Other MPI error, error stack: MPIR_Init_thread(498)..............: MPI...
Schatz asked 25/6, 2015 at 18:10

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I am developing an MPI application which requires to be run with a specific implementation of MPI (let's call it MPIvA). On my workstation, another implementation of MPI (let's call it MPIvB) is in...
Input asked 18/3, 2016 at 18:16

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I have defined a custom struct which I need to send over to another MPI process using the MPI_Bsend (or MPI_Send). Here is the struct: struct car{ int shifts; int topSpeed; }myCar; The issue...
Jaquez asked 25/3, 2012 at 22:4

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I am writing a machine learning toolkit to run algorithm with different settings in parallel (each process run the algorithm for one setting). I am thinking about either to use mpi4py or python's b...
Discommodity asked 10/6, 2018 at 19:38

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I had a quick look on the forums and I don't think this question has been asked already. I am currently working with an MPI/CUDA hybrid code, made by somebody else during his PhD. Each CPU has its...
Arborization asked 20/8, 2012 at 20:50

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I have a python script that depends on mpi4py implementation of MPI. This needs to be run through mpiexec (or mpirun). My Question is : How to run (and hopefully debug) a python script using mpiex...
Heath asked 16/8, 2019 at 5:8

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I would like to run a job on the cluster. There are a different number of CPUs on different nodes and I have no idea which nodes will be assigned to me. What are the proper options so that the job ...
Sower asked 12/8, 2019 at 19:12

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Solved

The problem I faced has been solved here: Loading shared library in open-mpi/ mpi-run I know not how, setting LD_LIBRARY_PATH or specifying -x LD_LIBRARY_PATH fixes the problem, when my installati...
Gerhardine asked 8/2, 2013 at 9:39

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I have a problem with running a python Hello World mpi4py code on a virtual machine. The hello.py code is: #!/usr/bin/python #hello.py from mpi4py import MPI comm = MPI.COMM_WORLD size = comm.G...
Provoke asked 25/3, 2015 at 19:19

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this is how we use MPI_Init function int main(int argc, char **argv) { MPI_Init(&argc, &argv); … } why does MPI_Init use pointers to argc and argv instead of values of argv?
Hornbook asked 15/4, 2010 at 5:41

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Does anyone know if it is possible to compile MPI with gcc?. I need to use gcc, no mpicc.
Tresatrescha asked 3/7, 2012 at 14:8

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Background I'm working on a C++ project in High Performance Computing using MPI. I have a function with a few different overloads, that I use to convert different types into strings: void append(...
Delve asked 21/5, 2019 at 21:8

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